Index

_

__init__() (pyemaps.crystals.Atom method), [1], [2] (pyemaps.crystals.Cell method), [1], [2] (pyemaps.crystals.Crystal method), [1], [2] (pyemaps.crystals.SPG method), [1], [2] (pyemaps.ddiffs.BlochImgs method), [1], [2] (pyemaps.ddiffs.BlochListError method) (pyemaps.display.DifPlotter method), [1] (pyemaps.display.NBPlot method), [1] (pyemaps.emcontrols.EMCError method) (pyemaps.emcontrols.EMControl method), [1], [2] (pyemaps.emcontrols.SIMControl method), [1], [2] (pyemaps.errors.BlochError method), [1], [2] (pyemaps.errors.BlochListError method), [1], [2] (pyemaps.errors.CellDataError method), [1], [2] (pyemaps.errors.CellError method), [1], [2] (pyemaps.errors.CellValueError method), [1], [2] (pyemaps.errors.CIFError method), [1], [2] (pyemaps.errors.CrystalClassError method), [1], [2] (pyemaps.errors.DiskError method), [1], [2] (pyemaps.errors.DPError method), [1], [2] (pyemaps.errors.DPListError method), [1], [2] (pyemaps.errors.EMCError method), [1], [2] (pyemaps.errors.LineError method), [1], [2] (pyemaps.errors.MxtalError method), [1], [2] (pyemaps.errors.PIndexError method), [1], [2] (pyemaps.errors.PointError method), [1], [2] (pyemaps.errors.SPGError method), [1], [2] (pyemaps.errors.SPGInvalidDataInputError method), [1], [2] (pyemaps.errors.SPGITMumberNotInRangeError method), [1], [2] (pyemaps.errors.SPGSettingNotInRangeError method), [1], [2] (pyemaps.errors.StereodiagramError method), [1], [2] (pyemaps.errors.UCError method), [1], [2] (pyemaps.errors.XDPImageError method), [1], [2] (pyemaps.errors.XTLError method), [1], [2] (pyemaps.fileutils.CIFError method) (pyemaps.fileutils.SPGError method) (pyemaps.fileutils.SPGITMumberNotInRangeError method) (pyemaps.fileutils.SPGSettingNotInRangeError method) (pyemaps.fileutils.XTLError method) (pyemaps.kdiffs.diffPattern method), [1], [2] (pyemaps.kdiffs.Diffraction method), [1] (pyemaps.kdiffs.Disk method), [1], [2] (pyemaps.kdiffs.Index method), [1], [2] (pyemaps.kdiffs.Line method), [1], [2] (pyemaps.kdiffs.Point method), [1], [2] (pyemaps.stackimg.StackImage method) (pyemaps.stackimg.XDPImageError method) (pyemaps.xtal.ACoord method) (pyemaps.xtal.MxtalError method) (pyemaps.xtal.Xtal method)

A

a (pyemaps.crystals.Cell property), [1], [2] absolute() (pyemaps.fileutils.Path method) ACoord (class in pyemaps.xtal) acoordList (pyemaps.xtal.Xtal property) add() (pyemaps.ddiffs.BlochImgs method), [1], [2] (pyemaps.kdiffs.Diffraction method), [1] (pyemaps.xtal.Xtal method) add_bloch() (in module pyemaps.diffract.bloch_dec) add_csf() (in module pyemaps.diffract.csf_dec) add_dif() (in module pyemaps.diffract.dif_dec)

add_dpgen() (in module pyemaps.diffract.dpgen_dec) add_mxtal() (in module pyemaps.diffract.mxtal_dec) add_powder() (in module pyemaps.diffract.powder_dec) add_stereo() (in module pyemaps.diffract.stereo_dec) alpha (pyemaps.crystals.Cell property), [1], [2] angle() (pyemaps.crystals.Crystal method), [1], [2] aperture (pyemaps.emcontrols.EMControl property), [1], [2] Atom (class in pyemaps.crystals), [1], [2] atoms (pyemaps.crystals.Crystal property), [1], [2] atype (pyemaps.crystals.Atom property), [1], [2] auto_fn() (in module pyemaps.fileutils), [1], [2]

B

b (pyemaps.crystals.Cell property), [1], [2] beginBloch() (pyemaps.crystals.Crystal method), [1], [2] beta (pyemaps.crystals.Cell property), [1], [2] bij (pyemaps.crystals.DW attribute), [1]

BlochError, [1], [2] BlochImgs (class in pyemaps.ddiffs), [1], [2] blochList (pyemaps.ddiffs.BlochImgs property), [1], [2] BlochListError, [1], [2], [3] bmin (pyemaps.emcontrols.SIMControl property), [1], [2]

C

c (pyemaps.crystals.Cell property), [1], [2] (pyemaps.kdiffs.Disk property), [1], [2] call_back() (pyemaps.display.DifPlotter method), [1] calOpacity() (pyemaps.kdiffs.Line method), [1], [2] Cell (class in pyemaps.crystals), [1], [2] cell (pyemaps.crystals.Crystal property), [1], [2] (pyemaps.xtal.Xtal property) CellDataError, [1], [2] CellError, [1], [2] CellValueError, [1], [2]

chmod() (pyemaps.fileutils.Path method) CIFError, [1], [2], [3] cl (pyemaps.emcontrols.EMControl property), [1], [2] cleanCSF() (pyemaps.crystals.Crystal method), [1], [2] clear() (pyemaps.kdiffs.Diffraction method), [1] compose_ofn() (in module pyemaps.fileutils), [1], [2] convertImage() (pyemaps.stackimg.StackImage static method) coord (pyemaps.xtal.ACoord property) Crystal (class in pyemaps.crystals), [1], [2] CrystalClassError, [1], [2] cwd() (pyemaps.fileutils.Path class method)

D

d2r() (pyemaps.crystals.Crystal method), [1], [2] data (pyemaps.stackimg.StackImage property) DEF_APERTURE (in module pyemaps.diffract.bloch_dec) (in module pyemaps.emcontrols), [1], [2] DEF_BMIN (in module pyemaps.emcontrols), [1], [2] DEF_CBED_DSIZE (in module pyemaps.diffract.bloch_dec) (in module pyemaps.emcontrols), [1], [2] DEF_CL (in module pyemaps.emcontrols), [1], [2] DEF_DEFL (in module pyemaps.emcontrols), [1], [2] DEF_DETSIZE (in module pyemaps.diffract.bloch_dec) (in module pyemaps.emcontrols), [1], [2] def_dict() (pyemaps.emcontrols.EMControl static method), [1], [2] DEF_DSIZE_LIMITS (in module pyemaps.diffract.bloch_dec) DEF_EXCITATION (in module pyemaps.emcontrols), [1], [2] DEF_GCTL (in module pyemaps.emcontrols), [1], [2] DEF_GMAX (in module pyemaps.emcontrols), [1], [2] DEF_INTENSITY (in module pyemaps.emcontrols), [1], [2] DEF_KV (in module pyemaps.emcontrols), [1], [2] DEF_MODE (in module pyemaps.emcontrols), [1], [2] DEF_OMEGA (in module pyemaps.diffract.bloch_dec) (in module pyemaps.emcontrols), [1], [2] DEF_PIXSIZE (in module pyemaps.diffract.bloch_dec) (in module pyemaps.emcontrols), [1], [2] DEF_SAMPLING (in module pyemaps.diffract.bloch_dec) (in module pyemaps.emcontrols), [1], [2] DEF_THICKNESS (in module pyemaps.diffract.bloch_dec)

DEF_TILT (in module pyemaps.emcontrols), [1], [2] DEF_XAXIS (in module pyemaps.emcontrols), [1], [2] DEF_ZCTL (in module pyemaps.emcontrols), [1], [2] DEF_ZONE (in module pyemaps.emcontrols), [1], [2] defl (pyemaps.emcontrols.EMControl property), [1], [2] det_size (pyemaps.emcontrols.EMControl property), [1], [2] diffList (pyemaps.kdiffs.Diffraction property), [1] diffPattern (class in pyemaps.kdiffs), [1], [2] Diffraction (class in pyemaps.kdiffs), [1] DifPlotter (class in pyemaps.display), [1] dim (pyemaps.stackimg.StackImage property) Disk (class in pyemaps.kdiffs), [1], [2] DiskError, [1], [2] disks (pyemaps.kdiffs.diffPattern property), [1], [2] displayFitImage() (pyemaps.stackimg.StackImage method) displaySearchKernel() (pyemaps.stackimg.StackImage static method) displaySearchMask() (pyemaps.stackimg.StackImage static method) displayXImage() (in module pyemaps.display), [1] (in module pyemaps.stackimg) doc_dec() (in module pyemaps.emcontrols), [1], [2] doc_dec_simc() (in module pyemaps.emcontrols), [1], [2] DPError, [1], [2] DPListError, [1], [2] dsize (pyemaps.emcontrols.EMControl property), [1], [2] DW (class in pyemaps.crystals), [1] dw (pyemaps.crystals.Crystal property), [1], [2]

E

EMC (in module pyemaps.ddiffs) EMCError, [1], [2], [3] EMControl (class in pyemaps.emcontrols), [1], [2]

endBloch() (pyemaps.crystals.Crystal method), [1], [2] excitation (pyemaps.emcontrols.SIMControl property), [1], [2] exists() (pyemaps.fileutils.Path method) expanduser() (pyemaps.fileutils.Path method)

F

farray() (in module pyemaps.fileutils) find_datahome() (in module pyemaps.fileutils), [1], [2] find_pyemaps_datahome() (in module pyemaps.fileutils), [1], [2] fname (pyemaps.stackimg.StackImage property) from_builtin() (pyemaps.crystals.Crystal class method), [1], [2]

from_cif() (pyemaps.crystals.Crystal class method), [1], [2] from_dict() (pyemaps.crystals.Crystal class method), [1], [2] (pyemaps.emcontrols.EMControl class method), [1], [2] from_json() (pyemaps.crystals.Crystal class method), [1], [2] from_random() (pyemaps.emcontrols.SIMControl class method), [1], [2] from_xtl() (pyemaps.crystals.Crystal class method), [1], [2]

G

gamma (pyemaps.crystals.Cell property), [1], [2] gctl (pyemaps.emcontrols.SIMControl property), [1], [2] generateBDF() (pyemaps.stackimg.StackImage method) generateBloch() (pyemaps.crystals.Crystal method), [1], [2] generateCSF() (pyemaps.crystals.Crystal method), [1], [2] generateDif() (pyemaps.crystals.Crystal method), [1], [2] generateDP() (pyemaps.crystals.Crystal method), [1], [2] generateDPDB() (pyemaps.crystals.Crystal method), [1], [2] generateMaskedImage() (pyemaps.stackimg.StackImage method) generateMxtal() (pyemaps.crystals.Crystal method), [1], [2]

generatePowder() (pyemaps.crystals.Crystal method), [1], [2] generateStereo() (pyemaps.crystals.Crystal method), [1], [2] get_settingmax() (in module pyemaps.fileutils) getBlochImages() (pyemaps.crystals.Crystal method), [1], [2] getCalculatedBeams() (pyemaps.crystals.Crystal method), [1], [2] getIBDetails() (pyemaps.crystals.Crystal method), [1], [2] getSCMatrix() (pyemaps.crystals.Crystal method), [1], [2] getsymmetryxyz() (in module pyemaps.fileutils) glob() (pyemaps.fileutils.Path method) gmax (pyemaps.emcontrols.SIMControl property), [1], [2] group() (pyemaps.fileutils.Path method)

H

hlines (pyemaps.kdiffs.diffPattern property), [1], [2]

home() (pyemaps.fileutils.Path class method)

I

I1 (pyemaps.kdiffs.Index property), [1], [2] I2 (pyemaps.kdiffs.Index property), [1], [2] I3 (pyemaps.kdiffs.Index property), [1], [2] idx (pyemaps.kdiffs.Disk property), [1], [2] Index (class in pyemaps.kdiffs), [1], [2] indexImage() (pyemaps.stackimg.StackImage method) intensity (pyemaps.emcontrols.SIMControl property), [1], [2] (pyemaps.kdiffs.Line property), [1], [2] is_block_device() (pyemaps.fileutils.Path method) is_char_device() (pyemaps.fileutils.Path method)

is_dir() (pyemaps.fileutils.Path method) is_fifo() (pyemaps.fileutils.Path method) is_file() (pyemaps.fileutils.Path method) is_mount() (pyemaps.fileutils.Path method) is_socket() (pyemaps.fileutils.Path method) is_symlink() (pyemaps.fileutils.Path method) isISO() (pyemaps.crystals.Atom method), [1], [2] (pyemaps.crystals.Crystal method), [1], [2] iso (pyemaps.crystals.DW attribute), [1] iterdir() (pyemaps.fileutils.Path method)

K

klines (pyemaps.kdiffs.diffPattern property), [1], [2]

L

lchmod() (pyemaps.fileutils.Path method) Line (class in pyemaps.kdiffs), [1], [2] LineError, [1], [2] list_all_builtin_crystals() (pyemaps.crystals.Crystal static method), [1], [2] load() (pyemaps.crystals.Crystal method), [1], [2] loadCrystalCIFData() (in module pyemaps.fileutils), [1], [2]

loadCrystalData() (in module pyemaps.fileutils), [1], [2] loadDPDB() (pyemaps.stackimg.StackImage static method) loaded() (pyemaps.crystals.Crystal method), [1], [2] loadImage() (pyemaps.stackimg.StackImage method) loc (pyemaps.crystals.Atom property), [1], [2] lookuphm() (in module pyemaps.fileutils) lstat() (pyemaps.fileutils.Path method)

M

mkdir() (pyemaps.fileutils.Path method) mode (pyemaps.emcontrols.EMControl property), [1], [2] (pyemaps.kdiffs.Diffraction property), [1] module pyemaps pyemaps.crystals, [1], [2] pyemaps.ddiffs, [1], [2] pyemaps.diffract pyemaps.diffract.bloch_dec pyemaps.diffract.csf_dec pyemaps.diffract.dif_dec pyemaps.diffract.dpgen_dec pyemaps.diffract.emaps, [1] pyemaps.diffract.mxtal_dec pyemaps.diffract.powder_dec pyemaps.diffract.stereo_dec pyemaps.display, [1], [2] pyemaps.emcontrols, [1], [2] pyemaps.errors, [1], [2] pyemaps.fileutils, [1], [2] pyemaps.kdiffs, [1], [2] pyemaps.scattering pyemaps.scattering.scattering, [1] pyemaps.spg pyemaps.spg.spg, [1] pyemaps.stackimg pyemaps.xtal

MxtalError, [1], [2], [3]

N

name (pyemaps.crystals.Crystal property), [1], [2] (pyemaps.ddiffs.BlochImgs property), [1], [2] (pyemaps.kdiffs.diffPattern property), [1], [2] (pyemaps.kdiffs.Diffraction property), [1] NBPlot (class in pyemaps.display), [1] ndisks (pyemaps.kdiffs.diffPattern property), [1], [2] ndtype (pyemaps.stackimg.StackImage property)

nformat (pyemaps.stackimg.StackImage property) nhlines (pyemaps.kdiffs.diffPattern property), [1], [2] nklines (pyemaps.kdiffs.diffPattern property), [1], [2] noffset (pyemaps.stackimg.StackImage property) normalizeImage() (in module pyemaps.display), [1] (in module pyemaps.stackimg) number (pyemaps.crystals.SPG property), [1], [2]

O

omega (pyemaps.emcontrols.SIMControl property), [1], [2]

open() (pyemaps.fileutils.Path method) owner() (pyemaps.fileutils.Path method)

P

Path (class in pyemaps.fileutils) PIndexError, [1], [2] pix_size (pyemaps.emcontrols.EMControl property), [1], [2] plot() (pyemaps.display.NBPlot method), [1] plot2Powder() (in module pyemaps.display), [1] plot_format() (pyemaps.emcontrols.EMControl method), [1], [2] (pyemaps.emcontrols.SIMControl method), [1], [2] plotControls() (pyemaps.display.DifPlotter method), [1] plotDDif() (pyemaps.display.DifPlotter method), [1] plotKDif() (pyemaps.display.DifPlotter method), [1] plotPowder() (pyemaps.crystals.Crystal method), [1], [2] plotStereo() (pyemaps.display.DifPlotter method), [1] Point (class in pyemaps.kdiffs), [1], [2] PointError, [1], [2] position_fig() (pyemaps.display.DifPlotter method), [1] prepare() (pyemaps.crystals.Atom method), [1], [2] (pyemaps.crystals.Cell method), [1], [2] (pyemaps.crystals.SPG method), [1], [2] printCSF() (pyemaps.crystals.Crystal method), [1], [2] printXYZ() (pyemaps.crystals.Crystal static method), [1], [2] pt1 (pyemaps.kdiffs.Line property), [1], [2] pt2 (pyemaps.kdiffs.Line property), [1], [2] pyemaps module pyemaps.crystals module, [1], [2] pyemaps.ddiffs module, [1], [2] pyemaps.diffract module pyemaps.diffract.bloch_dec module pyemaps.diffract.csf_dec module

pyemaps.diffract.dif_dec module pyemaps.diffract.dpgen_dec module pyemaps.diffract.emaps module, [1] pyemaps.diffract.mxtal_dec module pyemaps.diffract.powder_dec module pyemaps.diffract.stereo_dec module pyemaps.display module, [1], [2] pyemaps.emcontrols module, [1], [2] pyemaps.errors module, [1], [2] pyemaps.fileutils module, [1], [2] pyemaps.kdiffs module, [1], [2] pyemaps.scattering module pyemaps.scattering.scattering module, [1] pyemaps.spg module pyemaps.spg.spg module, [1] pyemaps.stackimg module pyemaps.xtal module pyemapsError, [1], [2]

R

r (pyemaps.kdiffs.Disk property), [1], [2] r2d() (pyemaps.crystals.Crystal method), [1], [2] read_bytes() (pyemaps.fileutils.Path method) read_text() (pyemaps.fileutils.Path method)

rename() (pyemaps.fileutils.Path method) replace() (pyemaps.fileutils.Path method) resolve() (pyemaps.fileutils.Path method) rglob() (pyemaps.fileutils.Path method) rmdir() (pyemaps.fileutils.Path method)

S

samefile() (pyemaps.fileutils.Path method) SAMPLE_THICKNESS (in module pyemaps.emcontrols), [1], [2] sampling (pyemaps.emcontrols.SIMControl property), [1], [2] savePlot() (pyemaps.display.DifPlotter method), [1] session_controls (pyemaps.crystals.Cell property), [1], [2] set_sim_controls() (pyemaps.crystals.Crystal method), [1], [2] setting (pyemaps.crystals.SPG property), [1], [2] shift (pyemaps.kdiffs.diffPattern property), [1], [2] showBloch() (in module pyemaps.display), [1], [2] showDif() (in module pyemaps.display), [1], [2] showDPDBMMask() (pyemaps.stackimg.StackImage static method) showImage() (pyemaps.display.DifPlotter method), [1] showMatchedDBDP() (pyemaps.stackimg.StackImage static method) showMatchingIndexMap() (pyemaps.stackimg.StackImage static method) showStereo() (in module pyemaps.display), [1], [2] simc (pyemaps.emcontrols.EMControl property), [1], [2]

SIMControl (class in pyemaps.emcontrols), [1], [2] sort() (pyemaps.ddiffs.BlochImgs method), [1], [2] (pyemaps.kdiffs.Diffraction method), [1] SPG (class in pyemaps.crystals), [1], [2] spg (pyemaps.crystals.Crystal property), [1], [2] SPGError, [1], [2], [3] SPGInvalidDataInputError, [1], [2] SPGITMumberNotInRangeError, [1], [2], [3] SPGSettingNotInRangeError, [1], [2], [3] StackImage (class in pyemaps.stackimg) stat() (pyemaps.fileutils.Path method) StereodiagramError, [1], [2] sth (pyemaps.emcontrols.SIMControl property), [1], [2] symb (pyemaps.crystals.Atom property), [1], [2] (pyemaps.xtal.ACoord property) symlink_to() (pyemaps.fileutils.Path method)

T

terminate() (pyemaps.display.DifPlotter method), [1] tilt (pyemaps.emcontrols.EMControl property), [1], [2] to_dict() (pyemaps.kdiffs.diffPattern method), [1], [2] (pyemaps.kdiffs.Disk method), [1], [2] (pyemaps.kdiffs.Line method), [1], [2]

touch() (pyemaps.fileutils.Path method) type (pyemaps.kdiffs.Line property), [1], [2]

U

UCError, [1], [2] uij (pyemaps.crystals.DW attribute), [1]

unlink() (pyemaps.fileutils.Path method) unload() (pyemaps.crystals.Crystal method), [1], [2]

V

validateSPG() (in module pyemaps.fileutils) viewExpImage() (pyemaps.stackimg.StackImage method)

vlen() (pyemaps.crystals.Crystal method), [1], [2] vt (pyemaps.emcontrols.EMControl property), [1], [2]

W

wavelength() (pyemaps.crystals.Crystal static method), [1], [2] write_bytes() (pyemaps.fileutils.Path method)

write_text() (pyemaps.fileutils.Path method) writeXYZ() (pyemaps.crystals.Crystal method), [1], [2]

X

x (pyemaps.kdiffs.Point property), [1], [2] xaxis (pyemaps.emcontrols.EMControl property), [1], [2]

XDPImageError, [1], [2], [3] Xtal (class in pyemaps.xtal) XTLError, [1], [2], [3]

Y

y (pyemaps.kdiffs.Point property), [1], [2]

Z

zctl (pyemaps.emcontrols.SIMControl property), [1], [2]

zone (pyemaps.emcontrols.EMControl property), [1], [2]